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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1000620 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 43568 |
| Total Scaffold Genes | 51 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (27.45%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008169 | Metagenome | 337 | Y |
| F009377 | Metagenome | 318 | Y |
| F104136 | Metagenome | 100 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_100062043 | F009377 | N/A | MIKSTKSESVSIARYDFQNVKRESLLSQNXAASEEEKDMNAMSNTEEKNTNALLFVYEMIKISINEELNAXITVNKTDDIIIFIKYMLHQHDIKIEIHNDMIQMLEDVNEINIMLKITQTRLQKEMKDKNVIIHHLKTASSRQSTSIFEDHFSKSIKLLNSSLFENSTQNVDNXLFXMQNKLKINKNHFSIEELKIAYIESXVSEAAIKHIASCMQTIFLNSFLEVEEVLLIINKMYDDFNHHHTTQQQYLKLYQNKIFFYEFXMKFQRFNAELKYNNETLLNDLQHKISSDLQRATLNE |
| Ga0272423_100062050 | F104136 | N/A | MIFSIRLAQIFSESXSMNKLXIXTNSLTSACKSTFDXRNXMLDQLSRHQLLKSLALLLASXRRSLLRFQLQSLHERNSKYXTLILLERSCLRKNSASNARSQNIKHVTVSSQLRCMKLQQIRKTICFRQSSDXERHAHILLHQYAXXFIXFQVIYCXHHLK |
| Ga0272423_100062051 | F008169 | N/A | MSSHSLIEERFEEFRNRFSQISDADSSKSRTKSSSAASFIHEDDESFAETIISLVFYEIXKTRSLALDEETDRLYELNKQQEDEIKELKTRLQAKENTSSNFIYSERSRSQKIPDSSLFTDEKNSTXENXYEKIQNKLEINVDLFSNERVKLSYVHSRLFDDAAEIIQARCERDCVNLYRIVDDLLKELAQLFDDLNKKVNFRREYYNLVQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLQFVXVDQLVQSDSLKEIHFYLIHLNNNQREIKDKIKRVDDLSKTIFHRAIVVTQSVDHSKSDQLKSRDAILTSVKEADILVESCFICHKSGH |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |