 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1000852 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35078 |
| Total Scaffold Genes | 44 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (15.91%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000597 | Metagenome | 998 | Y |
| F002432 | Metagenome | 559 | Y |
| F008169 | Metagenome | 337 | Y |
| F032102 | Metagenome | 180 | Y |
| F064252 | Metagenome | 128 | Y |
| F076668 | Metagenome | 117 | Y |
| F086375 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_100085223 | F008169 | N/A | MSSHSSTEEHFEEFRNRFFQIFDADSSKSSSAASFIQKDDESFAKMIILFVFYKIXKARSLALDEETDXLYKLNKQQEDEIKELKTRLQAKENTSSDFIYSERSRSQKIPDSSLFTDEKNSIXKNXYEKFQNKLEINVNLFSNKRVKLSYIHSRLFDDAAEITQARCERDCVNLYRIVDDLLKELAQLFDDSNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIADLKDKIHSRLXFIXVDQLVQSDSLKEIRFYLIHLNNDQRVIREIKNKIKRVNDLSKTIFHRATVITQSVNHLKSDQLKSHDAILTSVKEADILVESCFICHKSDHSFKECFDRSTRINAVNNEYDRFDFNSNFDSKN |
| Ga0272423_10008523 | F032102 | N/A | MKIADLKKNISESIYKQILEINEIDENCMLLREAIARDETQYEDIKLKNCXTQNEILYHDSQLXVSFNELL |
| Ga0272423_100085233 | F076668 | GAG | MHSTDHYAVKETSVFKSTTTTKKIMHMSNALSTDILMLCNRKDATNQTLLRCAKFENIRRSQKILFSKXSSKDXLERLCMIMLERTCYNMIFTFSALSXVLFKKSLKTLCASLXKVSALLFCIITLVVEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSVR |
| Ga0272423_100085236 | F086375 | N/A | MFILFVNSKSIASQNRGKNXFDEIKEHYKRQNNHHVVIFKRLHKLRQFNVXKEVNEIDKAAMKDNVRDEIEQERKNKDIHDNASQ |
| Ga0272423_100085239 | F002432 | N/A | MSFDSDTTDYKTIHERLEARKADDIVIXMKELLNFDHQQLKKTKLIIEVQINKHRRNIIYEVDDXVXLSFRIVKTTKLCKDLKDKQLNLYQITVKVSIFYHLHLSVSMKHLHSMFSSKLLQLYLEDLLSEQHSESLRSITIKNNEHXKINDILNFRRYRDQIQYKVKXTDLDRDDEXYYVDKEKFNDSEKVLNEFHKLYLNKSR |
| Ga0272423_10008528 | F000597 | N/A | MKDVLISSMMSISNDSFASESLPIECVLSSNKISYSLKSLIDIEAADYSFIDEVIAQIVCNQLQIESLTLIKVKSIREFNDHYAKKLITYVIYSNLTV |
| Ga0272423_10008529 | F064252 | GAG | LSLKKKQRSANHLRSXQSTKSRTSIKNHTQRELFILFNNNHHKFFKFSNSFIFTNEEESIXDSXRIKINDKLQTNVDHFDNENICIVYVISRLEDDTAEHIFAXRXHDALHSYILINELFEHLKEIYDELNRNRKCCCKYNALKQADKSFNVFYFDFMKLFNSLEYDDCILMNDLQNKINNRLQNALSVCSKNFTSLTCLRIFLQDVNSKQXVNYQLRSKRCIVIIKVTIVPDKCATSLLVTTSIIDYVKLTISFISESAKSSIICYICKILDHLFKNCSQLNKINTSASCAFTFRLHEIIISKNKKIEKMSFKNSETKN |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |