NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1000885

Scaffold Ga0272423_1000885


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1000885 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)34247
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (53.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008668Metagenome329Y
F025887Metagenome199Y
F065269Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10008853F008668N/AMILFYFNKEFHSRISFDSDTTDYETTRERLEAKKADDIVIQMKKLLNFNRQQLKKTKLIIEVQINKHRRNVIYEVDD
Ga0272423_10008855F025887N/AMSDDSFNFKSFTVDVILSSLEKIFRFLALINTEVIDMTFINESLMSKLCEHFDIQLILLSKLKLIQLYDEIFD
Ga0272423_10008857F065269N/AMTRSTESESVSIAHYDFQNVRRESLLSQNRAASEEEKGMNAMLNTEEKNMNVLLFVYEMIKISINEELNV
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