Scaffold Ga0272423

Basic Information
Taxon OID	3300033168 Open in IMG/M
Scaffold ID	Ga0272423_1000997 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033168 Open in IMG/M

Scaffold ID

Ga0272423_1000997 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	31648
Total Scaffold Genes	31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (45.16%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

31648

Total Scaffold Genes

31 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

14 (45.16%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-74.2	Long. (^o)	162.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-74.2

Long. (^o)

162.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010214	Metagenome	306	Y
F048018	Metagenome	148	Y
F074204	Metagenome	119	Y
F076668	Metagenome	117	Y
F086375	Metagenome	110	Y
F094625	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_10009971	F048018	GAG	MTLSXASXMIQRRSLSELSTYFLSXKYRXFSCSSYLTKEILLXCCASLQSALIIXAANLSLISTCFYNVXVKISAESSSRFRMSXSSXDLTSSTSNSLIFKFMKTRICKSAEIIENRCNXTESRTMICDXSFMTLMLKMSRARFSTILRSKTXVFRIVXYXYXCQESNVFLSLKRSSEXCVRAFNLSSILSKX
Ga0272423_100099710	F086375	N/A	MFTLFVNSKSIASXNRDENWFNEIKEHYKRQNNDHVIIFKXLHKLRQFNVLKEVNEIDKAAMKDNVRDEIEQKRKNKDIHDNASQ
Ga0272423_100099711	F076668	GAG	MHSTDHYAIKKTSVFKSTTTTKKIMHMSNALSTDIIMLCNRKDATNQTLLRCAKFENIRKSQKISFSKXSSKDXLERLCMIMLERTCYNMIFAFSTLSXVLFKKSLKTLCASLXKVSALLFCIITFVIEFSLTFCSMQTSTXQQFMSNASSFKIEIXDLXRISXXILMSCFSRQTRKCLSSSIK
Ga0272423_100099728	F010214	GAG	MKVSVLFDYDTSSLLCSSLMIFYTTMFXFNSXFKDERCFLCIHDAHDCNICRAAFSYSMIVIHXAEKYMMKERCTXXEDKVXLYXVILFFFXFNLCHINVELIVSINVQSQSFDVXLXSMKENAFXLFSXALNFSHK
Ga0272423_10009973	F074204	N/A	LIDNEVFAYVFINKFFAQQHHFFLHQLIHSCRLQEFDDQVALIDDITYVIEITMILDEHIEKLFFYVTELSQYLIIMSLS
Ga0272423_10009975	F094625	N/A	MKLSHNLLIDDEHAVEQFTQSMIENSVEIFHAMHELQNQVRQYDVIILFSFIIFSSSIYIELNSQSLATIAQIIAQILNNQSSFVVHLFVNSVAVFIASRFKKLLNISEYERNKDXLNAXKQNLIQRMNMNDDHYFSHQVKIIYVESXLIIDKKTHNSMNQYRVNDLCIIFIFTDX

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272423_1000997

Overview

Ecosystem & Geography

Associated Families

Sequences