NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1001042

Scaffold Ga0272423_1001042


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1001042 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30709
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (27.03%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F001951Metagenome612Y
F003820Metagenome466Y
F055319Metagenome138Y
F102181Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100104217F055319AGCAGMIEVRVKRLKLVDKMICIQISERDLAQKLNFSCRQRDFFIYIDNVTVVNVHDTQSEELLI
Ga0272423_100104218F001951N/AMMIMTKLKFIDSSRNEREKDKDTVKTTVTKMMIFELKELLVNAKMLLTLMNKTMMKMK
Ga0272423_100104220F102181GAGMIIVHVYTLYQTLLSCIQSIFVLLILRYVEKLLESRSDKDSDRICREMNNKKRLIVQDLCNDLSYHHERLRIQFYID
Ga0272423_10010424F000597N/AMKDVLISSTTSRSDDSFASESLTIKCVLSSNEISYSLKSLIDIEAADYLFIDEVITQIVCDQLQIESLTLIKAKSIREFNDHYAKKFITHVIYSNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272423_10010425F003820N/AMKLFSYLEYDDRTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNSKQRVNYQLRSERRTVIVKVTVIPDKRATSLSVTTSIISYVKSTISSISESARSSIICYICKTLDHLFKNCFQLNKIDTSASHAFTLRLHEIVISKNKENEKMSFENSEAKN
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