Scaffold Ga0272423

Basic Information
Taxon OID	3300033168 Open in IMG/M
Scaffold ID	Ga0272423_1001086 Open in IMG/M
Source Dataset Name	Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300033168 Open in IMG/M

Scaffold ID

Ga0272423_1001086 Open in IMG/M

Source Dataset Name

Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	29899
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (26.47%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

29899

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (26.47%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Ecosystem

Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location Name	Antarctica: Victoria Land
Coordinates	Lat. (^o)	-74.2	Long. (^o)	162.5	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Antarctica: Victoria Land

Coordinates

Lat. (^o)

-74.2

Long. (^o)

162.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F009580	Metagenome	315	Y
F010214	Metagenome	306	Y
F020121	Metagenome	225	Y
F035571	Metagenome	171	Y
F036035	Metagenome	170	Y
F038009	Metagenome	166	Y
F064254	Metagenome	128	Y
F074204	Metagenome	119	Y
F080690	Metagenome	114	Y
F104134	Metagenome	100	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0272423_100108612	F064254	N/A	MQELYESVSFLFFLSFIXFFNNITAXNXFNMLIESIIXMIIIAALTISKSFLKFMMFSSHCIAFHSTFHLKHVNRLCLINIQSLSHLHIIIVTSSTHLLCRNXLKSIFLMRSCVNNALXDFAXFLCSHRCRCVIFDVRYXKXAALNLSFQSILHVCLIYFCMSISFIITSVHXCSVNNRDKSCVSSIILFITSFSSTFACLVIQYNFSVTFQD
Ga0272423_100108619	F036035	N/A	MKDRTKDDAMQRKHHELEKVSRNHERDNSNYSNDTLDKHTESISDCDIIKESDERKKK
Ga0272423_100108624	F080690	N/A	MKLLHNLLIDDERAVEQFTQSMIENSVEIFCVMQELQNQVQQHDIIISSSFIILNSSIYIELNFQSLAIITQIITQILNNQSSFVVHFSANSVAVFIAFRFKKLLDIFEYKRNKDQLNAXEQSLIQRINVNDDHYLSYRVKIIYVESXFIIDKKTHNLISQYXINNFCIIFIFTDXXHKLHYYCNNFFETEDAHLYFRETLKQNMNSFVDYYNLFYQKKECSLMKDFSLIDCLKHNVNYFTQVIIFFXXNLNETQSFIFHQXVQAFSDINEELQQLKHH
Ga0272423_100108626	F009580	N/A	MKRLRLVDKMICIQISKRDLAQKLNFFREQRDFFIYIDDITVINIHDMQSEKLLIXAFFSDFAXMLQLAVVAQLSLVADFLDLKNDQSLILNDDNDET
Ga0272423_100108627	F074204	N/A	MIIFCILHQAQSKVFILALIDNEVFTYVFMNKFFMQQHYFFLHQLIHSCRLQEFNDQVALIDDITYVVEITIILNEHIKRLFFYIIELSQYFIIISLS
Ga0272423_100108628	F038009	GAG	MIKTLNFQLNYVKLYKRLIELICLKNNRSFKKKRILTLNFXXVFFLNDLKNTTRSFLFQMRNKTEXDLFLVNELNINXLFMSKRKIILLLVSRXETELLFASELRIKLLLVSELKTELLLSSEXKTRLLLTSELKTELLLLNEXKTKLLFASELSAELLLVSNL
Ga0272423_10010863	F010214	GAG	MRMSILFDYDASSLFCSSLTIFYTMIFXFNSRFKDERCFLYIRDAHDCNVHKAAFSYSMIIIHXAEKYVMKERCTXXEDKVXLYXITLFFFXFDLCHVDVEXIVSINVQSQSFNVXLXSIKENVFXSFSXTLNFSRE
Ga0272423_100108632	F020121	GAG	MLIAQIIYKFNVNLFHHSCFKYFIKDEVXLNACNLSIAHLTVKLNDHNVDFFKIKRVFKNNFLIIELNFSAFMKIQSIFHVILLNHITSDFLSNQRQKSXKLIIINNDERFXYVNSILNFKHDRCYNSFLLKYYIDXKDYFST
Ga0272423_10010865	F104134	N/A	MSSLLSLQSDMIKFLXSVNTSAILCRICSINFFCIFSIFLLFIILIMTSHFLXSDDESSLRRYFLVAISSFIMFAHDVIFVERRMLLCVCNCLLSSXTDVFSFYTFFAMNVFXFAXCFSSESSQRCXISFNVISFHEXSLLFFFSNVDIFISRSIMLVMFSSLLCKHFNFASLFSCDESTLLAIIFKSALLQFMQFIVIQLSSRFTLSCL
Ga0272423_10010868	F035571	N/A	MLTLLNISTTXCRVXFXSVSSLHSLLNSSSFLLRXCQTNASNAISDLTTAEYTCLAFVKIASHVKTSRXLSVSILVTXFIFICXRCTSHCSFMFSFTSRTCTSDFDLITELSIYMLVIMLNLFDFLVKYVSSYFSDANVASXVQVHFAQTLCALLSVLQISSVNLL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0272423_1001086

Overview

Ecosystem & Geography

Associated Families

Sequences