NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1001483

Scaffold Ga0272423_1001483


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1001483 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25058
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (46.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006206Metagenome378Y
F008668Metagenome329Y
F061401Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10014832F061401N/ALIHLNNDQRVIQEIKNKIKRVNDFFKTIFHKLTVITQSVDHVKSDQLKSRDAILTSVKEADILVESCFICHKSDHSSKECLNRSTKINAVNNEYDHFDFDSNFDSKN
Ga0272423_10014833F006206GAGLCKLDEILLKENYFEKSFLIDTHLISQNQSFNLRSLIDSDSIIYMIIHSNLVNKVCEKLKIQSISLTKEKLIRNYDEKISKKIITHKILLNLIIESHKKLTVSMLIADINHHEVILSKF
Ga0272423_10014839F008668N/AMTDYETTRERLKARKVDDIVIQMKELLNFDHQQLKKMKLIIEVQINKHKRDITYEVND
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