 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1001516 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 24602 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (11.11%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005901 | Metagenome | 386 | Y |
| F017767 | Metagenome | 238 | Y |
| F028667 | Metagenome | 190 | Y |
| F057012 | Metagenome | 136 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_100151622 | F057012 | N/A | VTENNIFIFCFINMSDDSFNFKSFTIDIILSSLKKIFRFLVLNLINIKVIDMTFIDKSLMSELYERFDIQSILLSKSKLIXLYDETFDXKLIIYTLYTLIMIQEYKNEMISLLITCLNQHKIIIENLXLKRNQILIDFTNDXLILLLKIQTLKSVVLKVSSQSAFYKSESSEICKMKXKNLNLIVTSMIILKRLMNQKSVNKFIESALIAKQST |
| Ga0272423_100151626 | F028667 | N/A | MIRDNKSVESRTACLLKSTANRRVFLISFNASTRSQNVAISXNINTSQQLCQXAINQSDEIIKMLIELRDQXNMTLKLNEQXIDLQVNHIKRLDELEINQTTINTQEETIIELRKKVLSLKKRQLSANQSXASIENHTXRKSFTLFNNDHHKFFKFSNSSIFTDEDESTXDSXRIKIDEKLQTNVNHFDNENICIVYVISRLEDDAAEHIFAQHQHDASHSYILINELFEHLKEIYNELNKNRKCCCKYNVLRQADKSFNVFYFNFMKLFSYLEYDNCTLMNDLQNKINNRLQNALSICSENFTSLTRLRIFLQDVNSKQRVNYQLRSERCTVIVKVTVVSDKCATTFLSAVMTSIIDYVKSIIFSISESDQAKSSIICYICKTSRHLFKNCSQLNKIDTSASHAFTLRLHEIIISKNKENEKISFENSEAKN |
| Ga0272423_10015165 | F017767 | N/A | MKDVLISSTTSMSDDSFASESLTIEYVLSSNEISYLLKLLIDIEAADYSFIDEVIAQIVC |
| Ga0272423_10015166 | F005901 | AGAAG | MNDKLIVNVDQFNDEIICIVYMMSRLEDDAAKHIFAXRHFDSLNLFTSIYELFDHLKEIYNELNKNQKSQPEYNALKQADKFFNVFYFNFMKLFSYLNYDDCTLMNNLQNKINNRLQNALSICSKNFTSLFHLKKFLQDVNNKQRVNYQLRSERCIVIVKVTVISDKRATFLSIITLIINYVKSTIFSISESARSSIICYICKTLNHLFKNCSQLNKINISASXAFILRLHEIIILKNK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |