NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1001568

Scaffold Ga0272423_1001568


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1001568 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24121
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (48.39%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000597Metagenome998Y
F005901Metagenome386Y
F013598Metagenome269Y
F048685Metagenome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100156824F005901N/AVISRLEDDAAEHIFARRQHDALHSYILIDELFEHLKEIYDELNKNRKCRRKYNALRQADKSFNVFYFNFMKLFSYLEYDDRTLMNDLQNKINNRLQNALSVCSENFTSLIRLRIFLQDVNSKQRVNYQLRNERRTVIVKVTVVSDKRATSLSVTTSIIDYVKSTISSISESARSSIICYICKTLDHLFKNCFQLNKIDTSVSCAFISRLHEIVISKNKENEKMSFENSEAKN
Ga0272423_100156825F000597N/AMKDVLISSTTSRSDDSFASESLTIECVLSSNEISYSLKSLIDIEAADYSFIDEVTAQIVCDQLQIESLTLIKAKSIREFDDHYAKKLIIHVIYLNLTVQDHTIDTASMLITRLDQHQMILEKT
Ga0272423_100156828F048685N/AMYRSDKQNIKIDALTRRADAVLRDSEDERICYQRITILTSNRMKIADLEKNISESIYKQILETNRIDENCMLLREAIARDETQYEDIKLKNC
Ga0272423_100156829F013598N/AMNFIIDLSDSSEYNAILTIICRLSKERHYISCITDNEDITVEKTAEMLIQ
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