NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1001709

Scaffold Ga0272423_1001709


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1001709 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22969
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (47.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F055319Metagenome138Y
F074204Metagenome119Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100170916F087980N/AMKSSHNLSIDDERAVKQFAQSVVENSVEIFRVMQELQNQVRQHDVVISFSFIIFSSSVYIKLNSQFLAMIAQIVAQILNNQSLLVVHFSANSVAVFIASRFKKLFDIFEYEKNKDRLNA
Ga0272423_100170917F001951GAGMMTMMKLRFIDSLKDERERDEDTVETTVTEMMIFEFQELLVNAEMFLTLMNEMMTKTKRD
Ga0272423_100170918F055319AGCAGMIEVRVKRLRLVDKMICIQIFERDLAQRLNFFRRQRDFFIYTDDVTVVDIHDTQSEEFLI
Ga0272423_100170919F074204N/AMIVFCILRQAQSRVLALALIDSEVFAYIFMNKFFVQQHYFLLHQLIHSCRLREFDDQVALINNITHVVKITMILDEHIERLFFYVTELSQYFIVMNLS
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