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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1001729 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22763 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (14.29%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F023763 | Metagenome | 208 | Y |
| F048018 | Metagenome | 148 | Y |
| F061399 | Metagenome | 131 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_100172911 | F008735 | N/A | MREIMIVIHIHALYQTLLSCIQSIFVSLILKYIKKLLEFKSNKDSDRVFKKMNDKKRLIVQDLCNDLNYHCKKLRIQLYINXRTENDEXEXNDNIMLLNLILKLLHYTKDLNXIFNHTLSELFNSTLIVDQEIVRXLHLSERITRXDFNVXKCCRKCRSFIMSETELN |
| Ga0272423_100172912 | F061399 | GAG | MIXHHDIXKHHDLLKFFMSDXNTQFIFNVXKHMYKMLKINVKLSIIYHFEIDDQIKRINAVMKHYLXIFINYMQNDXVKXLSEVKFIINNTSSLITLTSFFLINLNQNSCLNFKFSEFLLKNLMFQAXNKLINVKKFIKKMKKLTEHLHNEMFIAQIMYEFNVHLFCRSCFKYFIEDEVXLNVCNLSITHFTVKLNDHNVNLFKIKRVFKNNFLIIKLNLSAFMKIHLIFYVIFLSHITSDFLSNQHQKLQKLIIIKNDERF |
| Ga0272423_100172915 | F001951 | N/A | MIMMKLRFINSLKDKRERDEDTVETTVTEVMIFELKKLLINAEMFLTLINKMMIKMKXD |
| Ga0272423_10017297 | F048018 | GAG | MIRRRSLFELSTYFLSXKYKXFSCSSHSTRKILLXCYASLQSISIIXAVNLSLIXTYFHNVXVRMSAESSSRFRISXFNXDLTSLTLNSSIFKFIKARICKDAEIIKNRCNXIESKVMICDXSFMTLMLKTSKVRFSTILKFKT |
| Ga0272423_10017298 | F023763 | N/A | VIRDHLNRINKVFKLXLSFLESVNNDHKFFIVDFVVTLDXVMLLXKVSNXMKNLILIILXKNVFEYIVXSIDFYHNLVIXIIVMKNNLENEDFLKNIECNLTFLKSDKEYIFFDETSKRDSYSTIVINESFIEVREI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |