NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1001795

Scaffold Ga0272423_1001795


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1001795 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22221
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (53.85%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001951Metagenome612Y
F021216Metagenome219Y
F055319Metagenome138Y
F087980Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100179521F021216N/AMKSNATRREHHELEKALRNRERSDNNHSNDTLNEHIKSISSCDIIKESDKRERK
Ga0272423_100179522F087980N/AMIENSVEIFHAMHKLQNQVQQHDVIISFLFIILNSSIYIKLNSQFLVMIIQIVTQILNNQSSLVTHFSVNSVVVFIAFKFKKLFDIFEYKRDKD
Ga0272423_100179523F001951N/AMMIMTKLKFIDSLRNKRERNEDTVKTTVTKMMIFELKELLVNVEMFLTLMNEMIMKTK
Ga0272423_100179524F055319N/AMIEVRIKRLRLLDKMICIQISKHDLAQRLNFSYEQQDFFIYIDNIIVVNVHDMQSEELFI
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