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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1003585 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14668 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (23.53%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001951 | Metagenome | 612 | Y |
| F008735 | Metagenome | 328 | Y |
| F023763 | Metagenome | 208 | Y |
| F040408 | Metagenome | 161 | Y |
| F074202 | Metagenome | 119 | Y |
| F094624 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_10035851 | F094624 | N/A | MMYHFEIDDQIEKVNAVMKHYLXVFINYMQNNXVKXLSEVEFVINNTSSSIILTSFFLINLSQNSRLNFKFFKSLFENFMFQAXNKLINVKKFIKKMKKLTEHLHDEMFITQIIYEFNVNLFRRSCFKYFVEDEVXLNVCNLSITHFIIKLNDHNVDFFKIKHVFKNNFLIIELNLLTFMKIHSILHVILLSYIASDLLLNQRQKS |
| Ga0272423_100358517 | F040408 | N/A | MYDYKLIFDIHIENDAMKEEVSAAKEHVEMLQDMQNTLMQ |
| Ga0272423_10035854 | F023763 | N/A | MLRIKCISLFKKIFXATCQSIQLMIDLVEMISDAIVESRQKLTSMSLMTTQLLNXHEILKIFVIRDYLNRIDKVFELXLSFLKSANNDHEFFIIDFVVTLNXVMLLXKVSDXMKNLILIILRKNVFEHIVXSIDFYHNLVIXIIVMKNNFESEDFLKNVECNLTFLKSDKEYIFSDETSERSSYSTIVINESSIEVREI |
| Ga0272423_10035857 | F001951 | GAG | MTMTKFKFIDSSKNEKERNEDTVETTVTKMMIFELKELLVNAEMFLTLMNETMMKMKQD |
| Ga0272423_10035858 | F008735 | N/A | MFMRCIRLCFHAFNRFLILKYVKKLLESKSNKNSDRVCREMNNERRLIVQDLCNDLSYYCKRLRIQFYIDXRIENNEXEXDNEIMLSNLVLKLLHCAKDLNXIFDHTLSELFNSTLIIDRKIVKRLHXSKRITKXDFNVXKRCRKCKSFIMSKTELN |
| Ga0272423_10035859 | F074202 | N/A | MKTVNCKINCKTIYINFLLMSSCLLCSDNAFNLTFLLNNDFFLKLIISKLRLHVETKLNFKEEVILHCSFFTAKDDDLDSSFNLKIATNFIKFLXFTIFYNDXSSFFDLFLSVKYDVTRSKXANVENQAFKSEVVVDLAELNNINNVSSSKFKNLNCKNVIKRSTSIESLFFSSDIVN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |