NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1003918

Scaffold Ga0272423_1003918


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1003918 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13876
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009377Metagenome318Y
F070710Metagenome122Y
F104136Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100391819F009377N/AMTRSTELESVSIACYELXNTKRKSLLSQNXTASEEEDMNASLNTEEKNTNVLFFDHKMIKISISTELNAXINIHEADDLVVFIKYICQQHDIEIKIHNDMIQMLNDVNKINIKLKATQTTLNAVQMHLQKEMKKKNMIIHHLEVTSSQLSTSISKDRFSKSIKLSDFSLFEDSRQNVNNXLSXMXNKLKMNKNHFSIEEMKFAYVKSXVSETMIKHIAFRMRNMITNSFLEAEEILLIINKMYNDFN
Ga0272423_10039182F070710N/AMTKQFFLXILQYNIEKLLKIHESFLINRKVRKFDIVIIQKQECNINDLQSFSSAHNFFHLVKNSSSQSRTCIYVNKYLRLNQXTVETAKSDICLIKILTCNTDDKMQMLRLLNIYNLNSLFITFTERLSTISRLNELLKNDYE
Ga0272423_100391820F104136N/AMIFSIRLAQIFSESXLTNELXIXTNSSTFACKSTFYXXNXMLNQLSKHQRLKSLALSLASXXXSLLQSQLQSLHERNSEYXMLTLLERSCLKKNFASNARSQNIEHVTVLSQLRCMKSQXIXKTICFRQSSDXERHAHILCYDPSYAPMLVAMLVAMLMTIAGRSPLGYRV
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