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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300033168 Open in IMG/M |
| Scaffold ID | Ga0272423_1005060 Open in IMG/M |
| Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12028 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (26.67%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Antarctica: Victoria Land | |||||||
| Coordinates | Lat. (o) | -74.2 | Long. (o) | 162.5 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002432 | Metagenome | 559 | Y |
| F004755 | Metagenome | 424 | Y |
| F028367 | Metagenome | 191 | Y |
| F032102 | Metagenome | 180 | Y |
| F038009 | Metagenome | 166 | Y |
| F080688 | Metagenome | 114 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0272423_10050601 | F038009 | GAG | MIKASNFQLNYVKLYKRLIELICSRNNKSSKEERILTLDFXXVFFLNDLKNTIRSFLFQTRDKTERDLFLVNELNISXLLMSEREIILLLVSRRKTELFLSSEXRTKLLFASELKTELLLSSEXRTKLLLASEXETRLLLASELSAELLLVAICRLNCFLXVIHELSCFLXANXERDXREVTLLMLRS |
| Ga0272423_100506010 | F002432 | N/A | MKFNNNFNIFSITSMIFFYFNKEFHSXMSFNSDMIDYKITHEXLEARKANDIVIQMKELLNLNYQQLKKMKLIIEVQINKHRXDIIYEVDDXIXLSFRNVKTTRLCKDLKDKQLNLYQITVKVSIFYHLHLSVSMKHLHSMFSLKLLQSYSENFLSEQHSKSLKSITIEDDEHXKIDDILNFRCYXDQIQYKVKXTDLDRNDEXYYVNKEKFDDSKKVLNEFHKLYSNKSR |
| Ga0272423_100506014 | F032102 | N/A | MKIADLKKNISESIYKQILETNEINENCTLLRKAIAKDETQYEDIKLKNCRTQNEILYHDNQL |
| Ga0272423_10050606 | F004755 | AGAAG | MDLKDKIHLHFXFIXVDQLVQSNSLKKIHFYLIHLNNDQQVIRKIKNKIKCINDLSKTIFYRATVIIQLINHAKFDQLKSRDAILTNVKKADILVESCFICHKSDHSFKECFNQSTRINAVNNEYDCFDFNLNFDSKN |
| Ga0272423_10050607 | F028367 | N/A | LLXFQFEFRFKKLIISSKVIKEIEIISLCKLDEILLKENYFKKSFLIDAHLIFQNXSFSLHSLIDSDSVIYMIIHFNLVNKVCEKLKIQSISLTKEKLIRNYDEKIFKIIITHKILLNLIIESHKKLTVSMLITDIDHHEVILSKLXMNKNEILLNMXNDIIVFSNQLNTSISIFSISFNSKHSSXLQSTSSFSITQTKISIMLKXFIQEESFSIXSINAA |
| Ga0272423_10050609 | F080688 | N/A | MHXTTHSDVHRSSVFEDLHEKQTVELTTSQLSEHSIEVQLSDHL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |