NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1005479

Scaffold Ga0272423_1005479


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1005479 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11458
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (15.38%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Lecanoromycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033265Metagenome177Y
F044227Metagenome154Y
F048017Metagenome148Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_100547910F044227N/AMQLQMKSLDDEACTHALLELIAFAIKNVTKCXFLKLLNNHHYHEKFQSSSEDDDENKALEAI
Ga0272423_10054792F048017AGGMNTKVNALIRMLLANVFESAQCLENRFQTILIFDRVNVLFIELKANLYQQVXMINQIDEFCSEYRQAMNENKLKFHIIKLKNCEIIDDVLFRKDLLXVFENMHTKLLQEVHDQSSIFHFDNKRIIDLVQRFYYXSDHRATIQ
Ga0272423_10054793F033265N/AMFSVIEKTMTSQSKKRFESCYETSIDCMIYSVLLFQTETLNSYRLCEKVFASDXESQLVYSQSIILKSMINRNESIKMLNANLESTAITCRTTESNEYLXXNSVTISISSQSLQXFSSTSIKNFTLKXVSIQIRLTTKQLVNDLKLEKQMILSFEXKSYXTSIINNXKRRSXSSKFRSINIDETSSMK
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