NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1007159

Scaffold Ga0272423_1007159


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1007159 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9744
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038484Metagenome165Y
F058565Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10071593F038484N/AMNLILMCIMRMLSAFXKLSHIFIILLLRCNLCAENALIFATHSLYFSHCXFHXSLXYCAIAMLSLVEIILKKRMHHLHLNCIFTSSXMKTFRSIIFLMMSNXEMTXITFVKRTYINLHACLIFCIRSSTQLCSMILFCNMFKXTYNELVYVSVFKVSMLTLLNASATXCKVXFXIVSNLHSLLNSSSFLSRXCQIDALNAISDLIIVEYTCLAFVKIASHVKTSKXLSVSILVMXFIFICRRCVSHYSFMFSCIFRICTSDFNLITELSIYMLVIMSNLFNFLVKCVSSYFSDANVASXVQAHFAQTSCALLSVLQISSVNLS
Ga0272423_10071597F058565N/AMNCSNADSKIIASNVNSSQENRDARLKCLRNDEENIANIIDLLIKISTLEKEKSKDHS
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