NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1012618

Scaffold Ga0272423_1012618


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1012618 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6935
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019260Metagenome230Y
F040408Metagenome161Y
F075494Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10126182F019260N/AMSQFENISNTLSSASLVPINEPITAVQFRTHVNNALEAXYTFLIELQTXFNDIITQYINXVSACQQEHEQTQVELKQSQANNETLSEMVQGLKSMSRIDIKSEKYSNSELYIEERGNKLNQFIFELISKLKLNVNRYSTFESRLLYEYSRLSRNAAAQALSRMTAQHDKLVTIEQLVVLLRQAFDDSDKQGIAQRFISALRMRNRIFIEYLSDFQQHIDAIGYDVVIRKFNLKNELFSELKALLIQVNVSSLNYEQLIIKCQQLNSRYRVTVQNLSKSKAVIHPVSVIPTVPAYPAKYATSPAGSKATTSGSRDPMNLSTVNMKKRGSLIPEKRQHRMINHLCLYCGKPEHQAATCNSKPKIQLRAVSLFALATSIDNLASDTPLALGKA
Ga0272423_10126185F040408N/AMYDYELIFDIHIENDTMKEEMSAAKECIEMLQDVQNTLIKXX
Ga0272423_10126187F075494GAGMFVHNVNERRYSAKRVESRSQDEIYCTXVINEVKKMSVHNVNENISTCSAVHVRSILLKIIILTVRETHLDEVHFLKDRIFQFKSTTSRSTDVETLTHRDHNVAEKQLNSVAKTVDCKQLVSHAIVKVLTIHETIYNFSSKFIIELIKILQQEDEFAVRLKADETTSIXKSDVEAXTLNSQEMIKYNESLYVSEDLSVREKLLKRHHDDLLEINF
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