NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1039170

Scaffold Ga0272423_1039170


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1039170 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3410
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034417Metagenome174Y
F042663Metagenome157Y
F058564Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10391705F034417GGAGGMPYTIIKPRDAWMQQATDAWAALEPQAPQSAQLRALAAIDRDTIALLIEALAALTSGQVSQELQDLAGLRPVGEILGMPDRDDDDVEDW
Ga0272423_10391706F058564AGGAGMTPSGYTLHGHPFCLPCFDGDYHLNADGLAHAHDGQGCAADVAPIYAGDPADGAPCAGCGHPLATPPEAAIVWTCPACGSDDLRTFYSERRTCRVGTRVGTRDDTDAAPWPSYEGDEFVDIDPTTFAFACDTCTTYDITPHTGGETDALHHHQAA
Ga0272423_10391708F042663AGGAMTSQIIPATHVAASIPSIPPCPRPAGALDDGDVSVTTTFRPCSPIGSTEVITSLDALDDAALLTLLDVTISRLTAYRAAYQHALDEDAAPAPAPAPRPLPVPWHVW
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