NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272423_1062159

Scaffold Ga0272423_1062159


Overview

Basic Information
Taxon OID3300033168 Open in IMG/M
Scaffold IDGa0272423_1062159 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Mt New Zealand sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2439
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-74.2Long. (o)162.5Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023762Metagenome208Y
F041515Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0272423_10621591F023762GGAGMVAQAQDTYTPAIPIPAPGGPPRPLTPQERGRLGGQATLARHGTEFYSRIGRVGFQRAIEAGWGEYLLTKLGPSYRAKYGRDPVLGRNAAGDTARAQARRDKPTLGVCAWQGCLTPATERHHIDGWQHSADTCGLCDAHHTQLEHLWREALRRHRPYARLHEPPTKRAIAMSAGVGLDDAIHF
Ga0272423_10621592F041515AGGAGMTMNQIIVLEARQEERDAQDAPEAPQESPATLTHAAPTTLFEVIDRAVSAVLDQFDRWCDRDEREGEDEAHFEDYVRWRVAIIDDAAAQARTLMVAEGLTAEGSPWLAAHGRA
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