NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000057

Scaffold Ga0307507_10000057


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000057 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)164819
Total Scaffold Genes92 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)50 (54.35%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005943Metagenome385Y
F007161Metagenome356Y
F014479Metagenome / Metatranscriptome262Y
F056213Metagenome137Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100000575F096350AGGMAGLVYFFSAKAFLILAIITVKIIYSGVLANYASRVALII
Ga0307507_1000005759F014479N/AVGLEGFRLLSSSIVTVIEGVCVFLSVVGNCRCARVFELLVYLGIRACSAVLPRGLYYCNLLLLEGPSCLSATAVYKVFIEFLFRLSRDFKGEWWM
Ga0307507_100000576F056213N/AVDFSIRHSILLYYLLITFAQALRAPGRSMPIREVFSLGLKDLIRLLTSTELF
Ga0307507_1000005760F005943AGGMLQDGGNSYRMYIFGESIRRYAIDRKGRGRKEVIYLRVADVSYTRGIRKSTGLSYRGPYGGVP
Ga0307507_1000005765F007161N/ALDRGIVLKLGLKVLLGVPYGLTKEVEHFSFFKKEIVIVNTELSLYLNPPILKGRVYPIKQWLGVRELNRL
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