NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000060

Scaffold Ga0307507_10000060


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000060 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)162324
Total Scaffold Genes80 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)45 (56.25%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F014479Metagenome / Metatranscriptome262Y
F016500Metagenome246Y
F050242Metagenome145Y
F064278Metagenome128Y
F067281Metagenome125Y
F078050Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000006010F064278N/AMPLANAYCNTLINPTLVTCFNCGKDSYFTTFYLELKDIGNIKEIKEEEEMSNKLGKEEP
Ga0307507_1000006011F016500N/AMDKLIVEVTEAKKGLDTFYSIRGFLVIYCLNLLRVNFNSFYTNNKPKVLCLFYFKFIFLNINL
Ga0307507_1000006014F050242GGAMRLYIPISTAEDVGYFSLGSREVVRINFKLVLQLKLLIIKYRVSSVYKQ
Ga0307507_1000006022F067281AGGMLGIYCTYTSSRFNFRFIKLVTLKLHNYNSLEKIIIGRVEKHFIKRLNIAALNTASTLIRMSSIYALYIIGLSLN
Ga0307507_1000006027F078050N/AVDIKERLDKEKQLEDLREKDRARRKDLDKITVQLTH
Ga0307507_100000604F000247AGGVHTYIIYIALNYKRTLRIEVAHTNYLTSSLNISISKTPVPSSSVLFTYLFINGKLYYNSSLSLNKSIDATSTGL
Ga0307507_100000609F014479N/AMGMRKFRGAAPPFSKVACVVKGYIFLSGNRRYTRVFKLLAHLGIKAHLAVLPRVLYCRNLPLLERPSCLNATAFHKVFIEFPFRLSQDFKKG
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