Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000063 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	161300
Total Scaffold Genes	72 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (41.67%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (33.33%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

161300

Total Scaffold Genes

72 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (41.67%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F016255	Metagenome	248	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F025697	Metagenome	200	Y
F041673	Metagenome	159	Y
F056213	Metagenome	137	Y
F066630	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100000631	F000630	N/A	MGVKGIEVDLGKGNLSYSIGNTMGGKYLRAPRGPNKGGKYNSNTLKDRNNRTKRLALLGGYPSR
Ga0307507_1000006319	F000630	N/A	MLKRCIGVKGIEADLSKRNLSHSIVNAMGGKHLKALRRPNKGRKYNGNTLKNRGNRTKRLALLGRCPSR
Ga0307507_1000006321	F020829	AGTAGG	MPLVSSKLINNIMFSVYGTPLTLGLYTLIIYTGPLYIWIIITVISRLTACYNYKDRLIALLIIKHTRMAAFGLYRSWNPYGQYVNYV
Ga0307507_1000006325	F066630	N/A	MLLAAGTENYNTLLLIQKGLKAATWWLISQNILDQFWVAKEIAIEGKGASNRRPLITLQE
Ga0307507_1000006327	F021494	GAG	MSYIPINASISKSVIVSSSSLILTGWLYTLYKSAANVIFAALSLILDCPGLELAMAVHKGLPTGRPLPCVPCDPYVPIRSNNVARR
Ga0307507_1000006341	F016255	N/A	MPLFIPLNTSNSYLVEELNMRNINNKIIKDAFKDALSFTNPLESLPRE
Ga0307507_1000006345	F025697	AGGCGG	VDGKVAYSKDAGSGKASSKKVSGFLADFALSLLLSSTKPYKERFGIYFLKLY
Ga0307507_1000006364	F041673	N/A	MLFLGMPYRPASFLTIYKALLASLSIGVYFYTEVAIGVTGGTWLVWVLVVVAVRKIGI
Ga0307507_1000006366	F056213	N/A	MDFSVRRSISLYYLLITFTQALRAPSRSTPIREVFSLGLRDLIRLLTSTESFQPISFI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000063

Overview

Ecosystem & Geography

Associated Families

Sequences