NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000076

Scaffold Ga0307507_10000076


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000076 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)153480
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (55.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007022Metagenome359Y
F032105Metagenome180Y
F041673Metagenome159Y
F061712Metagenome131Y
F066630Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000007610F007022N/AMVTCFNYRKDSYFAISCLELKDIGNIKEIEKEEISNKLGKEEP
Ga0307507_1000007612F066630N/AMLLVAGTENYNTLLLIQKGLKAVTQWLISQNVLNQFWVAKEMVIKGGGVSNGRPLITLQ
Ga0307507_1000007613F041673N/AMPYRPTSFLTIYKAFLAYLSAGVCFCMGVAAGVTGGTWSVWVLLAVTAVRKVDV
Ga0307507_1000007624F032105GAGVDVIIIAKAPQLKPVRIIDVLKGNVLSLIVIADKILLKTIKVTISDCLIYMPKVARLFFKPLLLPLIEPY
Ga0307507_1000007640F061712GGALLSIAYSTILVAYYIRIVALKITSFPTIIIYRVRVVSFKITGLTTAIIKLRSFLKRTISAHIAGKQTEIAF
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