NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000077

Scaffold Ga0307507_10000077


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000077 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)151124
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (34.55%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007022Metagenome359Y
F050242Metagenome145Y
F064278Metagenome128Y
F064533Metagenome128Y
F089656Metagenome108Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000007727F050242N/AMRLYIPASTAEDVGHFSLGNREVIYINFKLILQLKLLIVKYRVSSVYKQ
Ga0307507_1000007741F096350N/AMAGLVYFFSARAFLISAIITAKIVYLGFLASYTNRVALII
Ga0307507_1000007743F007022N/AMVTYFNYRKDSYFIISYLELKDIGNIKEIEEEETSNKLGKEEP
Ga0307507_1000007745F064278N/AMPLANACCNTLINPTIVTCFDCGKNGYFTISYLEPKNIGNIKDIEEEETSNKLGKEEL
Ga0307507_1000007746F089656N/AMDRDGYNMVIILVNRFSKRPFLIPYYKNINAKEAA
Ga0307507_1000007748F064533N/AMGGPIYPLYPRIGIGLGSSLRGAFKKSASFIAYWVSIKAKVFAPELAKAEVKT
Ga0307507_100000778F064533N/AMGGPIRLLYPRIGIGLGSSLKGAFKKLASFTAHCISIKVKAFAPESAKAEVKTXYLL
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