Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000085 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	145635
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (67.19%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

145635

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (67.19%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F020829	Metagenome	221	Y
F021494	Metagenome	218	Y
F029000	Metagenome	189	Y
F050242	Metagenome	145	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000008544	F000630	GGAG	MGVKDTEAILGKRNPSYSIVNAMGSKHLRALRRPNKGKKYNGNTFKNRNNRTKRLALLGRCPSR
Ga0307507_1000008545	F020829	AGGA	VPLVSSKLITNIIFSIYRTLLTLRLYILIIYIGPLYVWIIITVISRLTTCYNYKNRLIALLIIKHIYIAAFGLYRS
Ga0307507_1000008549	F020829	GAGG	MSPNKIDFVPLVSSKLITNIMFSVYRTPLTLRLYTLIIYTSPLYIWIVITIISRLIACYNYKDRLIALLIIKYTRIAAFGSYRS
Ga0307507_1000008550	F021494	GAG	VSYVPTSASISKSVIISGSSPDFTGRLYTLYRSATNVIFAALSLILNYPSLKLAIDVHRGLPIGRPLPYIPYNPYIPYNPYIPVWFSNIAQRRF
Ga0307507_1000008552	F050242	GGA	VGLYIPTGTAKDVGHLGLSSREVVYINFKLVLQLKLPIIKYRVSSVCKQ
Ga0307507_1000008554	F000630	GGAG	MGVKGIEVGLGKGNLSYSMGNIMGGKYLRALRGPNKGRKYNSNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000008555	F021494	GAG	VSYIPTSLSKSKSVIASGSSPVLTSWLCAPYKPAAYIIFTALNLILNYPGLKLAVAVYRGLPTGRPLPCVPYVPYVPVRSGDVAWRCF
Ga0307507_1000008561	F021494	N/A	MSYVPTSASISKSVTISGFSPNFTSRLYTLYRLAVNIIFAVLSLILNCSGLKLTIAVHRGLSMGCPFLCVPCNPYVPI
Ga0307507_1000008563	F029000	AGG	MVVVNYLIKMRYMISMDLINAILVAEYFVKHVFKLHGLPNLIISDYRSQFVLDF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000085

Overview

Ecosystem & Geography

Associated Families

Sequences