NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000093

Scaffold Ga0307507_10000093


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000093 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)140468
Total Scaffold Genes58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (36.21%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F007022Metagenome359Y
F016255Metagenome248Y
F026200Metagenome198Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100000932F016255N/AMSNSYLVKELNIRDINNKIIKDAFKDALSFTNPLGSLPRE
Ga0307507_1000009320F007022N/ALAICYNCDKEGYFALSCPELKDIGDIKEMEEGETSNELGKKEP
Ga0307507_1000009321F000630GAGMGVKGIEVDLGKGNLSYSIGNTIGGKYLRALRGPNKGGKYNSNTLKDRNNRTKRLALLGGYSSR
Ga0307507_1000009336F056201N/AMAPSRSAKLRGLNTLTRKIPYGRIPRWIIVVGVPREYLSIAYRGKEKN
Ga0307507_100000938F026200N/AMYIKDLFKFPLIYDITVIIPFSYPTCNITTFLFINTYLTRDLFREPEADF
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