NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000098

Scaffold Ga0307507_10000098


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000098 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139597
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (53.49%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003725Metagenome471Y
F050927Metagenome144Y
F056201Metagenome137Y
F061416Metagenome131Y
F067281Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100000983F003725N/AMEMLINLYANLKEIAKLVQEQIKRYYNAKRFKGLDLKEGDKVWLLYKNFKS
Ga0307507_1000009833F050927N/AMPEYPVTRKEGIAYFIYKVTPLLSIDADKEIVYKVIKQYMLKVYNTYTRYMLYLYL
Ga0307507_1000009837F056201N/AMALSRSIELRGPNTLTRKISYGRMPRQIIVVGLPREYLSMVYRGKEMN
Ga0307507_1000009839F067281AGGMLGIYDIYTSSRFNSYSIKLVTLGLHNYSFLEKIIGRVEKHFIKRLNIAVLDTASTPIRISFVYTPYIIGLSLN
Ga0307507_1000009840F050927AGTAGMLEYPVTRKEGIAYFIYKAIPLLSIDADKETVYKVIKQYILKVSNAHARHI
Ga0307507_100000988F061416AGGAMHFKVIQERAKLAIAIDQVVYIGLFLIGRVLEWFKPYFTKIQVNSIITTN
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Institute for Fundamental Biomedical Research
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