NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000101

Scaffold Ga0307507_10000101


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000101 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)139105
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (45.00%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F002793Metagenome529Y
F003725Metagenome471Y
F017572Metagenome240Y
F029000Metagenome189Y
F038017Metagenome166Y
F078226Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000010125F002793N/AMDITPLVDNLKMLGIFKDKDKEEGDSVIDSLSIML
Ga0307507_1000010126F017572N/AMLEPAHGDIKPPVYKADTYRGQKEDKWQVSRIIGYEDVDDKI
Ga0307507_1000010134F078226N/AVLDIDADKNTNNNNSEEELEDPNGCYLILFRTLTIDKATSISVELANKACAYLLTVTFTEPTTETDPFNYNIITAALRYTSTVFMGIMIDTNALKKSMAGYR
Ga0307507_1000010137F029000N/AMRYIIPINLINIILVAKYFIKYVFKLHELPNLIISNYKSQFVLDF
Ga0307507_100001014F038017AGCAGVVRLIRYRFKLKDKDKLRVNLKYTAHYTLSWIAYVDNTYNIYRALKDKNQKYLVRIY
Ga0307507_100001017F002793N/AMDIIPLVDDLEILGIFKDEDKEKGDGITDTLSTVL
Ga0307507_100001018F003725AGCAGMEILINLYINLMETAKVVQQRIKKYYNAKRSKGLDLKKGDKV
Ga0307507_100001019F002555N/AMLEIFKNKDKEKGDSIINALSTILQLLREELEEAS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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