NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000102

Scaffold Ga0307507_10000102


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000102 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)138998
Total Scaffold Genes111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (63.96%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F024756Metagenome204Y
F050242Metagenome145Y
F067281Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_10000102102F024756GGAMPIYSIVHCIIVGESAGTNSLKRLVLRLESAIAAGKTETSNLYKTFLDLLL
Ga0307507_10000102109F067281AGGMLGICYTYTSSRFNFRFIKPVTLKLYNYNSLEKIIIGKVEKHFIKRLNIAALNTASTLTRMSSVYTLYIIGLSLNQLTTSKSVAVVHTK
Ga0307507_10000102111F002220AGGMHLLKSNSVIKLSFSFSFTIRFAFTSSSSLRAKNWSSPKIIISLVYIPIIPNGVPVVVIRKQGSNIEVVIKSFSLWYLL
Ga0307507_1000010298F050242GGAMRLYIPTSIAEDIGHLSLSSIEVVCINLKLILQLKLLIIKYRVSSVCKQRRVRNLCGLQ
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