NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000115

Scaffold Ga0307507_10000115


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000115 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)133047
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (54.76%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F000746Metagenome908Y
F002220Metagenome581Y
F006298Metagenome376Y
F021494Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000011533F006298N/AMERRLVIKNSDGLYTIYFTILSKVLVGKVVLNFYIYKELFSLINLTLKVFYTFILSQEALEVGYSNLIIFNISCTLAKLIIYLLLLIKRVPS
Ga0307507_1000011534F000746N/AMTRTRQTVYIVAIVEDIVEDMINDYKAKVEVLIEVYSEVITRRSAMFIKSQIAS
Ga0307507_100001154F002220AGGMHLLKSNSIVKLSFSFGFAIRFAFTSLSSLRAKNWSSPKIIILLVCMLIIPNRVPVVIIRKHRLNIEVVIKSFSL
Ga0307507_100001155F021494GAGMSYIPINASISKSIIISSYSLILTGWLYTLYKSAANIIFAALSLILNYPGFKLTMAVYKGLPIERPLTCVPCDPYVPIWSSNVTRHRFWPVKAWDGWPSPLVLKVGNARKAPMSH
Ga0307507_100001157F000630GGAGMGVKGIEANLGKRNLSYSIVNAIGGKYLRALKRPNKGRKYNSNALKNRNNRTKRLALLGRCPSR
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Institute for Fundamental Biomedical Research
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