NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000120

Scaffold Ga0307507_10000120


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000120 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)131683
Total Scaffold Genes54 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (51.85%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F006298Metagenome376Y
F041034Metagenome160Y
F056213Metagenome137Y
F081096Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000012026F056213N/AVDFGIRRSILLYHLLITFTQALRAPNRSTPIREGFSSGLRDLIRLLISIELFQPISFI
Ga0307507_1000012027F041034AGGVDVSRILMLVKFSGILRLVELGGFFRCRVDVSRNFKLVDPGGFFRFWFRV
Ga0307507_1000012035F006298N/AMEHRLVIKNSNGLYAIYLTILSKVLVRRVVLNFHIYKELFNLINLTLKVFYAFVLNQEALEVGRSNLAISNVSYTLTELIICLFLFIKGVSS
Ga0307507_1000012036F002220AGGMHPLKSNSVIKLSFSFSFAIRFAFTSLSSLRAKNWLSSKIIILLVCMPIIPNRVPVVIIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000012043F081096N/AMHIYGGGYRGNTGQLDKVLTVRDIGQLIKGGDISLVSRRGGSRLSGAGPSVSTAPLL
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Institute for Fundamental Biomedical Research
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