Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000123 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	131323
Total Scaffold Genes	84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (57.14%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

131323

Total Scaffold Genes

84 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

48 (57.14%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F014479	Metagenome / Metatranscriptome	262	Y
F019457	Metagenome	229	Y
F035578	Metagenome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000012310	F035578	N/A	VARVEDMAEGIINIDYKAIIEVLMEVYLKTINRRNTMFIRSQIAG
Ga0307507_1000012311	F019457	GGA	MQTNNIIILRDDQFSALKEDELVKANLIVKLKKKLNLIILLLFNRCILSLNKDSIALHQK
Ga0307507_100001233	F000630	N/A	MLERYIGVKGIEADLGKRNPSYSMVNVIGGKYLRALRRPNKGRKYNSNTFKNRNNRIKILALLGRRPSR
Ga0307507_1000012331	F000247	AGG	VRTNAIHIALSYKRTPRIEVAHTNYLISSLNISVGKTPVPNSSVPFAHLSIGGKPYYNSSLSLNGSIDPTSIGL
Ga0307507_1000012333	F014479	N/A	VGPEGFQLLSGGITSVIEGVCVFLSSDYRCARVFELLVHLGIRARSAVLPRGLYCRNLSLLKGPSYLNAMAFYKVSVEFLFRLSQDF
Ga0307507_100001236	F000630	GGAG	MGVKGIEVDLGKGNLSRSIGNTIGGKYLRALKGPNKGRKYNGNTLKDRNNRTKRLALLGRYPSG
Ga0307507_100001237	F035578	N/A	VAGVGDTVEGTINVNYKEIVEVLMEVYLKIINRKNAIFVKS
Ga0307507_1000012383	F002220	AGG	MHPLKSNSVVKLSFSFSFAIRFAFTSLSSLRAKNWSSPKIIILLVCMPIILNGVSIAVIRKHGLNIKVFIKSFSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000123

Overview

Ecosystem & Geography

Associated Families

Sequences