NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000146

Scaffold Ga0307507_10000146


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000146 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)122913
Total Scaffold Genes55 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (69.09%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F005943Metagenome385Y
F007022Metagenome359Y
F009949Metagenome310Y
F032105Metagenome180Y
F038017Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000014614F005943AGGVVKRRNVMSRGGGSGYKTYVFEESIRRCAIDRKGRGRKEVIYLRVADVSCTRGVREGTGLSYRGPCGGVP
Ga0307507_100001462F002555GGAMLGIFKDKDKEKGDGVTDALSTILQLLGEESAEAS
Ga0307507_1000014621F007022N/AMYFNYRKDSYFTISYPELKDIGNIKEIKEEEISNKLGKEEL
Ga0307507_1000014622F032105GGAMDIIITAKAPQLKPVRIIDILKGNILSPTIIADKILLKTIKVTISNCLIYMPKVAKLFFKPLLLPLIEPY
Ga0307507_100001464F038017GAGVVRLTRYRFKLKDKNKLRVNPKNAAHYKLLWIAYMDNIYNIYRAPKDKNWKYLVKIY
Ga0307507_100001469F009949GGAMGNAMGGKYPRAPRGPNKGRKYNGNTLKDRNNRTKRLASLGGCPSR
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