NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000156

Scaffold Ga0307507_10000156


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000156 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)121111
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (61.54%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002220Metagenome581Y
F003725Metagenome471Y
F005943Metagenome385Y
F015182Metagenome256Y
F078050Metagenome / Metatranscriptome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100001561F078050N/AMIGMVDIKEQLNEEKQLEDLREKVRARRKDLDDIMV
Ga0307507_1000015614F015182GGCGGVTKAISNFFKEIFLVFSVILGKNSSIFLEFNIELIK
Ga0307507_1000015617F005943N/AMASSILDNKITLTNLVLRNAGNGYKAYVFGESIRRYAIDRKGRGRKEMIYPRVADISCTRGVRESMGFSYRGPYDRVP
Ga0307507_1000015627F002220AGGMHLLKSNSVVKLSFSFSFAIRFAFTSLSSLRAENWSSPKIIILLVYMPTILNRVPVVIIRKHRLNIEVVIKSFSL
Ga0307507_100001569F003725GAGMNLYVDLKEIAKLVQERIKRYYNTKRSKGPDLKEGDKVWLLYKNFKS
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