Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000160 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	119762
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (57.89%)
Novel Protein Genes	11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (54.55%)
Associated Families	11

Scaffold Components

Scaffold Length (bps)

119762

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (57.89%)

Novel Protein Genes

11 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (54.55%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F002793	Metagenome	529	Y
F003725	Metagenome	471	Y
F006298	Metagenome	376	Y
F017572	Metagenome	240	Y
F020829	Metagenome	221	Y
F035578	Metagenome	171	Y
F038017	Metagenome	166	Y
F056201	Metagenome	137	Y
F061416	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100001601	F056201	N/A	MAPSRSVKLRGLNTLTRKIPYGRMPRQIIVVGVPREYLSIVYRGKEMN
Ga0307507_1000016014	F061416	GGA	MHFKVVQKGVKLVISLNQVAYAELFLIGRALKWFKLYLTEI
Ga0307507_1000016018	F017572	N/A	MLEPVYGNVKPPVYKADIYKGQEEDKWQVLKIISHKDIDDEI
Ga0307507_1000016019	F002220	N/A	MRFAFTSLFSLRAKNWSSPKIIILSVYMPTIPNRVPIVIIKKQGLNIEVVIKSFSL
Ga0307507_1000016021	F006298	GAG	LVVKDSNGLYAIYLTILGKVLVRRVVLNFHIYKELFGLINLTLKIFFAFILNQEALEVGYSNLIISNVLYTLAKLIICLLLSIKRVPS
Ga0307507_1000016022	F035578	GGA	MVARVGDIAEGTINVNYKVIIEVLVEVYLKTIDRRNAMFIRSQIAG
Ga0307507_1000016024	F000630	N/A	MLERCIGVKGTEANLGKRNPSYSMVNAMGGKYLRALKRPNKGRKYNGNTFKNRNNRTKRLALLGRCPSR
Ga0307507_1000016025	F020829	AGTAGG	MPLVSSKLITNIIFFIYGTPLTLGLYILIIYTGPLYVWIIITIISRLTTYHNYKDRLIALLIIKHMHIAAFGLYRS
Ga0307507_100001603	F002793	AGGA	MDQTDVTPLVDDLKILGIFKDKDKEEGDSVTDALSTML
Ga0307507_1000016031	F003725	N/A	METLINLHNYLKSIVKLVQERIKRYYNAKRSKGPDLKEGDKVWLPHKNFKS
Ga0307507_1000016038	F038017	AGCAG	VVRLTRYRFKLKDKDELKVNLKYTAYYILLWIAYIDNTYNIYRVSKDKNRKYLVRIY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000160

Overview

Ecosystem & Geography

Associated Families

Sequences