NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000162

Scaffold Ga0307507_10000162


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000162 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)119654
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (55.38%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002220Metagenome581Y
F064296Metagenome128Y
F080892Metagenome114Y
F096350Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000016247F064296AGGVLYNPPIVDTTAISAIVFHFNIYQKDNEVFIISLYKINRIINKREEKLIKETNKELVKYLLPTVYTKYKDVFLRAALDKLPPYRMYNYKI
Ga0307507_1000016254F096350AGTAGGVYFISARAFLILAIVMAKIIYLGFLVSYTNRVALIIQISIERGVSYQLATSF
Ga0307507_1000016257F000630GGAMLERYIGVKVIEANLGKRNLSYSIVNVIGGKYLRALRRPNKGRKYNNNTLKNRNNRTKRLALLGRCPSR
Ga0307507_1000016262F080892AGAAGMLVVNTIEDLLLLVASTYIDPPDVETLVINIIEDLLLLAASTYRDPPVLV
Ga0307507_1000016263F002220AGGMHPLKSNSVVKLSFSFSFAIRFTFTSLSSLRAKNWSSPKIIILLVYMLTILNRVPIVIIRKQGLNIEIVIKSFSLWCLL
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