NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000171

Scaffold Ga0307507_10000171


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000171 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)116816
Total Scaffold Genes32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (28.12%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002793Metagenome529Y
F017572Metagenome240Y
F029000Metagenome189Y
F082146Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000017110F029000N/AMIPMDLINIILVAECFIKHVFKLHGLPNLIISNYKSQFVLDF
Ga0307507_1000017116F017572N/AMLELVYSNIKLLVYKEDIYKGQEEDKWQVLKIISYKDVDNKI
Ga0307507_1000017127F082146N/AMFYVSLLQPLRDNSITREILLLPPIIINNGNGSYFINLINNIQWKI
Ga0307507_100001715F002793N/AMDITPLVNNLEILGIFKDKGKEEGDGIMDSLSIML

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