NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000185

Scaffold Ga0307507_10000185


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000185 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114599
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (30.56%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002555Metagenome548Y
F002793Metagenome529Y
F029000Metagenome189Y
F081096Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000018517F002793N/AMDITPLVNNLEILEIFKDKDKEEGDGVTDSLSIIL
Ga0307507_100001852F029000N/AMRYIIPIDLINIILVAKYFIKYIFKLYRLFNLIISNYKSQFVLDF
Ga0307507_1000018526F002555N/AMLRIFKDKDKEEGDSVTDALSTILRLLGEETAEAS
Ga0307507_1000018535F081096N/AMHTYGGGYRGNTGQLDKDSTVKDTSQLIKGGDTSLVSRRGESRLSGMGPSVSTAPLLQDIVGLL
Ga0307507_100001858F000630GAGMGVKGTEAVLGKRNPSHSMVNAMGGKYLRALRRPNKGRKYNSNTLKNRNNRIKRLALLDGCPSR
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