NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000207

Scaffold Ga0307507_10000207


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000207 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)111150
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (33.33%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F015182Metagenome256Y
F060493Metagenome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000020712F060493N/AMQRDFIVLMLSLDISGAYNNVSYKRLLYILRAKGFLE
Ga0307507_1000020716F015182N/AMAGGCVTKAINNFFEEIFLVFSIVLGKGFGIFLEFNIEFIK
Ga0307507_100002073F002555AGTAGMLGIFKDKDKEEGDSITDALSIMLQLLREELEEAS
Ga0307507_1000020730F003725N/AMETLINLYIDLKETAKLVQKQIKRYYDAKRSKGPDLKEGDKVWLLYKNFKS
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