NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000230

Scaffold Ga0307507_10000230


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000230 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106922
Total Scaffold Genes89 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (64.04%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → dothideomyceta → Dothideomycetes → Pleosporomycetidae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002555Metagenome548Y
F024756Metagenome204Y
F027375Metagenome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100002304F000630N/AMLERQIGVKGTEVDLGKGNPSRSIGNTIGGKYLRAPRGPNKGRKYNSNTLKDRNNRTKKLALLGRCPSR
Ga0307507_100002305F027375AGGVLILRYIFNKRQNKDQNTLLNMVPLLDIIPLNVLNRSYRSKNRSTSSATIIVIKIAKYLKNFIYLLVITRIALATSLVLILVGGKPIIKSIINSNIGPYRIGSTNNSLYRRYLGIYTLWYVLYLNI
Ga0307507_100002306F024756GGAMPIYSIAYCITAGESASINGLKRLVPRLESVIVVGETEISNLYKTFLDLLL
Ga0307507_1000023084F002555GGAMLGIFKDKDREEGDSIMDALSTMLQLLGEESVEASWLI

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