NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000231

Scaffold Ga0307507_10000231


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000231 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)106698
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (75.68%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003725Metagenome471Y
F005943Metagenome385Y
F014479Metagenome / Metatranscriptome262Y
F015182Metagenome256Y
F024756Metagenome204Y
F027375Metagenome194Y
F038017Metagenome166Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000023110F024756GGAMLIYNIAYYITAGESTSTNSLKRLVPYLGSIIVAGKIEISNLYKTFLDLLF
Ga0307507_1000023115F014479AGTAGVTIIEGIYVFLSVAGNRRCARVFELLEHLSVRTYSAVLPKGLYYHNLLLLKGPSCLNATAFYKVSIEFPFRSSRDFKGGW
Ga0307507_100002312F027375N/ALDIIPLSMLNKSHSSKNRSISSATVIIIIIAKYPKNFIYLLTITRIVLATSPILILVGGKPIIKSIINSNIGPYGIKSTNNLL
Ga0307507_1000023123F038017AGCAGVVRLTRYRFKLKDKDKLRVNLKYVAHYILLWIAYVDDIYNIYRALKDKNRKYLVRIY
Ga0307507_100002313F005943AGGMSRNGGNGYKTYVFEESIRRCAIDCKGRGCKEVIYPCVADISCTRGIYESTGFSYGGPCGWVP
Ga0307507_1000023130F038017GAGVVRLTRYRFKLKDKDKLRVNLKYIAYYILSWIAYVDNICNMHRALKDKNRKYLVRIY
Ga0307507_1000023132F003725N/AMETLINLYIDLTEIAKLVQQRIKKYYNAKRSKGPDLKKGDKV
Ga0307507_100002314F015182GGCGGMAKVISYFFKKIFLIFSVVLGKDSGMFLEFNIELVK
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