NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000251

Scaffold Ga0307507_10000251


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000251 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)104917
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (61.90%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F000746Metagenome908Y
F002220Metagenome581Y
F006298Metagenome376Y
F007022Metagenome359Y
F064278Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000025116F064278N/AMPLANTRYNTLINSISVTCFNYEKDSYFTISCLELKDTGNIKEIKEEEEMSNKLEKEEP
Ga0307507_1000025119F000746GGAMVAVVGNIVKAIINVNYKAIVEALIEVYFEVIARRSAIFVRSQIAS
Ga0307507_1000025120F002220N/AMESLFRERIYPLKSNSIIKLSFSFSFAIRFAFTSLSSLRVKNWSSPKIIILLVYIPMIPNRVPIVIIRKQGLNIEVVIKSFSL
Ga0307507_100002513F002220AGGVHPLKSNSIVKLSFSFSFAIRFAFTNLSSLRAKNWSSPKIIILLVYMLTIPNRVPIVIIRKHGLNIEVVIKSFSL
Ga0307507_100002514F006298N/AMERRLVIKNSNSLYAIYLTILSKVLVRRVVLNFHIYKELFGLINLTLKIFYAFILNQEALEVGHSDLIISNISCTLMKLIIYLLLLIKGVSS
Ga0307507_100002515F000630N/AMILVRLTMERRIGVKGIEANLGKRNPSHSIVNAMGGKHLRALRRPNKGRKYNSNTLKNRDNRTKRLALLGRCSSR
Ga0307507_100002517F007022N/AMCFNYGKDGYFATFCPEPKDTGNIKEIKEEETPNKLGKEEP
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Institute for Fundamental Biomedical Research
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