Scaffold Ga0307507

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000291 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99853
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	18 (64.29%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

99853

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

18 (64.29%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

44.5508

Long. (^o)

-123.25

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y
F005943	Metagenome	385	Y
F015182	Metagenome	256	Y
F021494	Metagenome	218	Y
F061416	Metagenome	131	Y
F081096	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_100002911	F061416	AGGA	MQMHFKVVQEGVKLVTSLDQVAYTGLFLTGRALKWFKPYLTEI
Ga0307507_1000029114	F081096	N/A	MHTYGGGYRGNIGQLDKDLTVKDTGQLIKGGDTSLVSRRGESRLSSIGPSVSMAPLL
Ga0307507_100002912	F005943	AGG	MLWDGGNGYRAYVFEESIRRCVIDRKGRGRKEVIYLRVADVSYTRGVRGSTGLSHGGPCGGVP
Ga0307507_1000029120	F002220	GAG	MHLLKSSGVIKLSLSFSFAIRFTFTSLSSLRVKNWLSPKIIILLVYIPIILNRVPIVIIRKQGLNIEVVIKSFSLWCLL
Ga0307507_1000029124	F000630	GAG	MGVKGIEANLGKRNLSYSIVNAIGGKYLRALRRSNKGRKYNSNTFKNRNNRTKRLALLGRRPSR
Ga0307507_1000029125	F000630	GAG	MGVKGTEADLGKGNLSYSMGNTIGGKYLRAPRGPNKGRKYNSNTLKDRNNRTKKLASLGRCPSR
Ga0307507_1000029127	F021494	N/A	MELSISVSYIPTSLSKFEFVIAPSSSPVFTSWLYAPYKLAACVIFTVLNLILNYPGLKLAIAIYGGLPTGCPLPYVLYVPYIPIQSGNIAQYCF
Ga0307507_100002913	F015182	GGCGG	VTKAISNFFKKVFLVFSIILGKDSGIFLEFNIELIK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307507_10000291

Overview

Ecosystem & Geography

Associated Families

Sequences