NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000307

Scaffold Ga0307507_10000307


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000307 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)98702
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (72.92%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005943Metagenome385Y
F020829Metagenome221Y
F032490Metagenome179Y
F056213Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000030727F056213N/AVDFGVRRSISLYYLLIIFTQALRAPSRSTPIREVFSLGLRDLIRLLTSVKSF
Ga0307507_1000030732F020829GAGGMSPNRINSVPLISSKLITNIMFSICGTSLTLRLYILIIYTSPLYIWIVITTISGLTACYNYKDRLIALLIIKHTRIAAFSLYRSWNP
Ga0307507_1000030736F056213N/AVDFSVRRSILLYYLLITFTQALRAPSRSIPIREVFSLGLRDLIRLLTSIELF
Ga0307507_1000030739F005943AGGMSWGGGSGYKAYVFEESTRRCAIDRKGRGRKEVIYLRVADISCTRGVRKSTGLSYRGPCGGVP
Ga0307507_1000030743F032490N/AMSNLKNNPIPILNPRHQLIPGEFDLLALALTPKRKPSSLKDYNNLNKVDTDNILSFINYITIDKKAKGLLPIRIKI
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