NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000311

Scaffold Ga0307507_10000311


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000311 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97826
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)31 (65.96%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003457Metagenome485Y
F007161Metagenome356Y
F020829Metagenome221Y
F021494Metagenome218Y
F024756Metagenome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000031117F007161AGCAGVPYYLINGCKSDRGIVLKLGLKVPLGVPYSLTKEVKHFGFFGKEIVIVNTELPLYLNPLIFKGRVYPVG
Ga0307507_1000031122F024756GGAMPIHSVAYYIIAGESAGTNSLKRLMLRLGSIMVVGKIEVSNLYKTFPDLLL
Ga0307507_100003113F003457N/AMAGLVCFFGTKAFLILAIIVAKIVCSGFLVSRTSGVAPIIWISKVLSKLRLSLVSYIVSYSVLDLVLGLVLDIELVLDLGLGSLSILFIVEYQFFWYLYILSLDLCLV
Ga0307507_100003118F021494GAGVSYIPTSASIFKSIIISSFSPVLTSWLYTLYRLAVNVIFAVLNLIFNYPGLKLAIAIHRGLSIGRPLPYVPYNPYVPIRSGNIA
Ga0307507_100003119F020829AGTAGGMPLVSSKLITNIIFSICGTPLTLGLYILIIYTGPLYVWIIITAISRLTACYNYKDRLIALLIIKHTRIAAFSSYRSWNPWGQYINYI

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