Scaffold Ga0307507_10000318

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0307507_10000318

Scaffold Ga0307507_10000318

Overview

Basic Information
Taxon OID	3300033179 Open in IMG/M
Scaffold ID	Ga0307507_10000318 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	97284
Total Scaffold Genes	78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	49 (62.82%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Eukaryota	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.5508	Long. (^o)	-123.25	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000247	Metagenome	1464	Y
F000630	Metagenome	971	Y
F002220	Metagenome	581	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307507_1000031872	F002220	AGG	MHLLKSNSVVKLSFSFSFTIRFAFTSLSSLRAKNWSSPKIIVLLVYIPIIPNRVPMVVIRKHRLNIEVVIKSFSL
Ga0307507_1000031876	F000247	N/A	MYIALNYKRTLYIEVARTSCLASSLNIFIGKTLVPNSDVLFARPFVDGKLYYNGGLSLNESIDLTSTGL
Ga0307507_1000031877	F000630	GGAG	MGVKGIKADLGKGNLSRSMGNTIGGKYLRALRGPNKGGKYNGNTLKDRNNRTKRLALLGRCPSR

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