NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000319

Scaffold Ga0307507_10000319


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000319 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)97264
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000247Metagenome1464Y
F000630Metagenome971Y
F002555Metagenome548Y
F064533Metagenome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_100003192F002555AGTAGMLGIFKDKDKKEGDSITDSLSTILQLLREELEEASWLI
Ga0307507_100003193F064533N/AMGSPIRPLYPRIGISLGSSLRGTFKKLASFTVYWVSIKAKAFTLELAKVEVKT
Ga0307507_1000031932F000630GGAMLERQIGVKGIEVDLGKGNLSYSIGNAIGGKYLRALRGPNKGGKYNSNTLKDRNNRIKRLALLGGCSSR
Ga0307507_1000031935F000247AGGLVYTYIMRVALNYKRTPYTEVAYTSYLTSSLNIFIGKTPVPSSSVLFTHLFIDKKLYYNGGLFLNKSIDLTSTCL
Ga0307507_1000031936F000630GGAGMGVKGTEADSGKRNPSRGMVNAIGGKHLRAPRRPNKGRKYNSNTFKNRDNRTKRLALLGRYPSRQPKI
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Institute for Fundamental Biomedical Research
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