NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000351

Scaffold Ga0307507_10000351


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000351 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)94015
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (52.17%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000630Metagenome971Y
F002220Metagenome581Y
F016255Metagenome248Y
F056201Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000035119F000630N/ALARLALERYIGVKSLEANLGKRNLSYSIVNTIGDKYLRALRRPNKGRKYNSNTFKDRNNRTKRLALLGKCPSR
Ga0307507_1000035120F056201N/AMAHSRSIRLRGLNTLTRKIPYGRIPRQITVVGVPKEHLFIVYRGKEIN
Ga0307507_1000035122F002220N/AMESLFRERMHLLKSNGVVKLSLSFSFAISFAFASASSLRAENWSSPKIIILLVYMPTIPNGVPVVIIRKQGLNIEVVIKSFSL
Ga0307507_100003517F016255N/AMPSSIPLNTSNSYLVKKLNTRDVDNKIIKDAFKDALSFTNSLESLPRE
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