NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307507_10000387

Scaffold Ga0307507_10000387


Overview

Basic Information
Taxon OID3300033179 Open in IMG/M
Scaffold IDGa0307507_10000387 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)91221
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (26.47%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)44.5508Long. (o)-123.25Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002555Metagenome548Y
F003725Metagenome471Y
F015182Metagenome256Y
F017572Metagenome240Y
F032490Metagenome179Y
F074608Metagenome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0307507_1000038720F002555N/AMLEIFKDEDKEEGDGITDALSTMLRLLGEELEEAS
Ga0307507_1000038721F017572N/AMLELAHGDIKPLVYKADTYRGQEKDKWQVLKIISYEDVDNET
Ga0307507_1000038722F003725N/AMLMNLYIDLKEIAKLVQEQMKRYYNAKRSKGPDLKEGDKVWLLYKNFKS
Ga0307507_1000038731F015182N/AMASGCVTKAISNFFKKIFLVFGIILGKDSGVFLEFNIELTK
Ga0307507_1000038732F032490N/AVFYRDIPTVTGLVPLQLNPQRQLILRVFNLLALALTPKGKPSSLKDYNNLNKVDINNILSFINYITIDKQAKGLLSIKIKI
Ga0307507_100003879F074608N/AMERRLVIKNSNGLYAIYLTILSEVLVRRVVFNFYIYKELFGLINLTLKIFYAFILN
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